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DNA methylation
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0
votes
1
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1.4k
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
5.7 years ago
grayapply2009
• 0
1
vote
2
replies
3.0k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 6.4 years ago by
Peter Langfelder
★ 3.0k • written 6.4 years ago by
enora.fremy
• 0
1
vote
2
replies
1.4k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 7.0 years ago by
Lukas Chavez
▴ 570 • written 7.0 years ago by
mtefit
• 0
7
votes
7
replies
2.2k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 7.1 years ago by
Sean Davis
21k • written 7.1 years ago by
RichardJActon
▴ 50
1
vote
2
replies
2.0k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
7.3 years ago
peter.fransquet
• 0
0
votes
0
replies
1.0k
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
7.6 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.4k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
7.8 years ago
gabrielrfries
• 0
0
votes
1
reply
1.5k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 7.9 years ago by
Gordon Smyth
53k • written 7.9 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
2.5k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 8.0 years ago by
Marcel Ramos
700 • written 8.0 years ago by
michaelwxf2012
• 0
1
vote
1
reply
2.5k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
skids121
• 0
0
votes
0
replies
1.6k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
8.7 years ago
Thomas
• 0
1
vote
2
replies
1.4k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 8.8 years ago by
James W. MacDonald
68k • written 8.8 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.5k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 9.4 years ago by
James W. MacDonald
68k • written 9.4 years ago by
fleur_p90
• 0
13 results • Page
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Comment: gene Set with high AUC score but no cells assigned to cell type
by
e.j.aaw.g.erm
• 0
It sounds like AUCell is struggling with thresholding because your cDC2 gene set doesn t show a clear bimodal distribution. While a high AU…
Comment: featureCounts -L: high unassigned:mapq fraction
by
insurancetaaddddaxrealty
• 0
FeatureCounts can behave differently with ONT cDNA BAM files due to long read splice patterns, and many users compare settings or presets m…
Comment: A problem occurs when running the monocle2
by
e.j.aaw.g.erm
• 0
For gamers facing technical issues or errors in complex scripts, the Redz Hub script download provides a reliable tool to optimize performa…
Answer: How can I correctly use phyloseq with Docker?
by
Kevin Blighe
★ 4.0k
The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
by
Kevin Blighe
★ 4.0k
Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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