Bioconductor DNA methylation

Showing : DNA methylation • reset

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1.4k

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minfi cell proportion estimateCellCounts DNA Methylation

5.8 years ago grayapply2009 • 0

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3.1k

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normalization DNA methylation WGCNA

updated 6.5 years ago by Peter Langfelder ★ 3.0k • written 6.5 years ago by enora.fremy • 0

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1.4k

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medips medip-seq dna methylation dmr analysis

updated 7.1 years ago by Lukas Chavez ▴ 570 • written 7.1 years ago by mtefit • 0

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2.3k

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R gdc rna-seq dna methylation

updated 7.2 years ago by Sean Davis 21k • written 7.2 years ago by RichardJActon ▴ 50

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2.0k

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minfi normalization outliers dna methylation densityplot

7.4 years ago peter.fransquet • 0

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1.0k

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differential variability dna methylation iEVORA DVP

7.6 years ago poojitha.stemcell ▴ 10

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1.4k

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rnbeads methylation methylationepic dna methylation

7.8 years ago gabrielrfries • 0

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1.5k

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dna methylation biseq

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by ahmad.moousavi • 0

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2.5k

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tcgabiolinks dna methylation

updated 8.1 years ago by Marcel Ramos 700 • written 8.1 years ago by michaelwxf2012 • 0

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2.5k

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dna methylation illimina 450k methylation beta M significance

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by skids121 • 0

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1.7k

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CNV minfi preprocessing dna methylation

8.7 years ago Thomas • 0

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1.4k

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microarray HM450 dna methylation cohcap

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by poojitha.stemcell ▴ 10

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1.5k

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minfi bumphunter DNA methylation illumina450k

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k

WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…

Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by victor04052024 • 0

You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by victor04052024 • 0

The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…

Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k

We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.

Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0

I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…

Votes

Limma-voom sample weights and impact on DEG numbers

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

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